species:   Comil
pid:       PID1142
parent:    milR10
paralog:   
locus:     NW_006271970.1:3463964-3464031
matures:   ['GUGCUUGAGUUACCUGCCAGACAAAA', 'CUGUCCUGUUCGAGCAAGCGA']
srr:       SRR8054057
genome:    /Users/jax/+Genomes/Fungal_genomes/Comil.GCF_000225605.1_CmilitarisCM01_v01_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Shao2019-xf.SRR8054057.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Shao2019-xf.SRR8054057.cram NW_006271970.1:3463964-3464031

0 out of bounds
3 alignments
1 proper strand
1 stranded perfect matches

              ****************   **********************             
UGCCGCCCUGUCCUGUUCGAGCAAGCGAGAACCAGUCGUGCUUGAGUUACCUGCCAGACAAAACGGCG
.((((...((((.(((((((((..((((.......)))))))))))........))))))...)))).
-------------------------------------GUGCUUGAGUUACCUGCCAGACAAAA----- l=26 a=0 c
-------CUGUCCUGUUCGAGCAAGCGA---------------------------------------- l=21 a=0 c*
-----------------------------------UCGUGCUUGAGUUACCUGCC------------- l=20 a=1 ma
----------------UCGAGCAAGCGAGA-------------------------------------- l=14 a=0 ma*

-----------------------------------UCGUGCUUGAGUUACCUGCC------------- l=20 a=1 (ma)

mb-00011
ax-1001011
ku-01
ss-100110001000
fn-101
